Accounting for a medical biology laboratory in 2026
SEL, third-party payment, COFRAC accreditation, VAT exemption: why a medical biology laboratory's accounting is steered on margin, cash and compliance, and which ratios to track.
Expert note: This article was written by our chartered accountancy firm. Information is current as of 2026. For a personalised review of your situation, contact us.
The accounting of a medical biology laboratory (LBM) is unlike any other. Revenue is largely framed by negotiated tariffs, cash flows pass through the French health insurance system and complementary insurers, and the production tool combines heavy analysers, perishable reagents and highly qualified staff. All within an often complex legal structure: an SEL, sometimes backed by an SPFPL holding, frequently operating across several sites. For a biologist owner, the challenge is not to "do more volume": it is to steer a constrained margin, tight cash and permanent compliance. Here is how a chartered accountant reads this kind of file.
Direct answer. An LBM is steered on three specificities: the operating structure (SEL, sometimes SPFPL, capital held by biologists), the economic model under negotiated tariffs (NABM, B letter-key, VAT exemption on care acts) and the double pressure of COFRAC accreditation costs and third-party-payment collection delays. The firm's role: turn these constraints into a dashboard.
Revenue framed by the NABM and the B letter-key#
Medical biology tests are coded under the medical biology nomenclature (NABM) and valued through the B letter-key. Prices are negotiated: a laboratory does not freely set its tariffs and can barely use price to improve profitability. The accounting consequence is direct. Performance is won on costs (reagents, payroll, organisation) and on volumes, far more than on tariff. In other words, an LBM's margin lever is internal: it depends on purchasing control and technical productivity, not on a pricing policy.
VAT exemption: a false advantage, a real cost#
As care acts, medical biology tests are in principle VAT-exempt. This exemption comes with a counterpart many owners underestimate: the input VAT paid on reagents, analysers and services is not recoverable as it would be in a standard taxable activity. The "VAT-inclusive" purchase cost therefore becomes a real cost. Concretely, every euro of reagent carries its full VAT into the margin, which reinforces the importance of close monitoring of the reagents line. It is a point an LBM's accounting must isolate from data entry onward, not discover at year-end.
Third-party payment: produce today, collect later#
Almost all of an LBM's revenue runs through third-party payment: the French health insurance system for the mandatory share, complementary insurers (mutuelles) for the complementary share. The laboratory produces the act today but collects later, and from multiple payers. This generates a large volume of receivables to track, rejections to reprocess and a structural working-capital requirement.
Monitoring the DSO (average collection period) on third-party-payment receivables is one of the most telling indicators in the file. A growing laboratory can post good results while straining its cash, for lack of close monitoring of receivables and rejections. It is the classic gap between production and collection, particularly treacherous under negotiated tariffs.
COFRAC accreditation: expense for the period or capitalised asset?#
Since order no. 2010-49 of 13 January 2010 (the medical biology reform known as the "Ballereau order"), accreditation has been mandatory for all LBMs. It is provided for in article L. 6221-1 of the French Public Health Code, is based on the NF EN ISO 15189 standard and is granted by COFRAC (the French accreditation committee). Since 1 November 2021, a laboratory can no longer carry out tests on scope lines for which it is not accredited: in practice, accreditation covers 100% of the activity.
This is not a one-off formality but a recurring, multi-year cost: a quality function (quality manager), documentation and quality management system, internal and external audits, and fees to maintain accreditation. The accounting stake is twofold. First, identify these charges clearly rather than diluting them in undifferentiated overheads. Second, decide what is an expense for the period and what may, where relevant, be capitalised. Isolating the full cost of accreditation relative to revenue allows a decision on grouping or pooling to be made on facts rather than endured.
SEL and SPFPL: the structure drives the tax outcome#
An LBM is most often operated as a professional practice company (SELARL or SELAS), a form suited to a regulated profession. Capital ownership follows rules specific to healthcare professions: the medical biologist is a physician or pharmacist biologist, and both capital and voting rights remain regulated.
Above the operating company, one frequently finds an SPFPL (financial holding company for liberal professions), which holds the shares of one or more SELs. This holding structure organises ownership among partners, finances an acquisition or external growth and structures the flow of profits upward. The sector is undergoing marked concentration (groupings, multi-site networks), which makes the quality of patrimonial and tax structuring decisive.
Steering indicators for an LBM#
Beyond the tax return, an LBM is steered on a few ratios. Thresholds depend on the profile (single site, network, specialised) and are calibrated file by file.
| Indicator | What it measures | Why it matters |
|---|---|---|
| Reagent cost / revenue | Weight of consumables | First margin lever (non-recoverable VAT) |
| Third-party-payment DSO | Average collection period | Drives working capital and rejections |
| Payroll / revenue | Weight of qualified staff | Productivity, not very flexible short term |
| Quality cost (COFRAC) / revenue | Accreditation charge | Objectifies compliance effort per euro produced |
| Margin per site | Operating profitability | Decides grouping, specialisation or disposal |
To go further on these specificities, see our dedicated page: chartered accountant for medical testing laboratories.
Representative case (illustrative)#
A multi-site LBM operated as an SELAS was hesitating over closing or grouping a peripheral site seen as "just breaking even". Three angles were examined: the real margin per site (not the overall result), the full cost of accreditation allocated to each location, and the third-party-payment DSO, which was more degraded on the site concerned due to unprocessed rejections. The review showed the site was not structurally loss-making: it suffered from poorly steered collection and duplicated quality costs. The decision could be taken on figures, not on an impression. These elements are specific to the file and are not a transposable benchmark.
This work falls within our bookkeeping and accounting review engagement, with analytical tracking by site and by line.
Frequently asked questions
Does VAT apply to medical biology tests?+
No, in principle: medical biology tests are VAT-exempt as care acts. The counterpart is that the input VAT paid on reagents and analysers is not recoverable, making it a real cost to watch.
Is COFRAC accreditation an accounting expense?+
Largely yes: the quality function, documentation, audits and maintenance fees are recurring charges. Some elements may, depending on the case, be capitalised. The point is to isolate them clearly rather than bury them in overheads.
Why monitor third-party-payment receivables so closely?+
Because an LBM produces the act before being paid, by several payers, with rejections to reprocess. Without DSO monitoring, a growing activity can strain its cash despite good results.
Do you necessarily need an SEL and an SPFPL?+
The SEL (SELARL or SELAS) is the usual operating form for an LBM. The SPFPL, a holding company, is not mandatory but common when organising ownership among biologists or financing external growth. The right set-up depends on your situation.
In practice#

Article written by Samuel HAYOT
Chartered Accountant, registered with the Institute of Chartered Accountants.
Regulated French accounting and audit firm based in Paris 8, built to support companies across France with a digital and decision-oriented approach.
Sources
Official and operational sources cited for this page.
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